PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23521-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 292aa    MW: 30560.4 Da    PI: 6.5209
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23521-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-0758104245
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 
                      g WT e  + + +a ++   g     W++Ia   g g+t++++k ++ 
  TRIUR3_23521-P1  58 GGWTWEQNKAFENALALVDLGegeaVWNKIADAAG-GKTAEEIKRHYE 104
                      56*************99888888************.**********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.04156109IPR001005SANT/Myb domain
SuperFamilySSF466893.12E-859114IPR009057Homeodomain-like
CDDcd001672.58E-560107No hitNo description
SMARTSM0071717137174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-4138170IPR009057Homeodomain-like
SuperFamilySSF466892.34E-7141177IPR009057Homeodomain-like
CDDcd001670.00491142172No hitNo description
TIGRFAMsTIGR015576.7E-8142174IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVTEGGFGFG SGGWMWEQDM VFENALLLVD LQEGEAVWNN MAGVVEVKKG SGSGSGPGGW  60
TWEQNKAFEN ALALVDLGEG EAVWNKIADA AGGKTAEEIK RHYELLVADV DAIEAGRVPL  120
PVYTDGGSPE EGGSGGKKGC GRYGKGDWRS ISRNFVISRT PTQVASHAQK YFIRLNSMNR  180
ERRRSSIHDI TSVNGEASAA QGPITGTNGQ AAVPGKSPKQ SPHQPGNLPP GVDAFGTTIG  240
QPVGGPLVSA VGTPVTLPVA APPHMGYAMH APVPGTVVPR APMYPMPPPP SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1450128279RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669320.0AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09.
GenBankAK3726190.0AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448771.11e-104hypothetical protein SORBIDRAFT_06g032880
TrEMBLM7ZBJ30.0M7ZBJ3_TRIUA; Transcription factor MYB1R1
STRINGMLOC_72275.21e-170(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-43MYB family protein